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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12600336_12600836_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12600336 - 12600836
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAAAAAT
5'SS Class:
major
3'SS Sequence:
GCAGCTTCACGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTCTTCTTGATG
Flanking Amino Acid:
FKKTYKELLTIAKTAPSRYK
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1
72.9
31
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
45.3
-0.2
1.7
43.7
42.1
Minor 5ss
30.8
-2.2
3.1
40.1
40
Minor BPS
69.1
0.45
1.3
69.43
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019490
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036958
12600002 - 12600892
891