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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12601861_12603352_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12601861 - 12603352
Intron Length:
1492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTACCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
GTTTCTCTACCC
Flanking Amino Acid:
NTGETFTVYYKNKEVGIVDN
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.5
27.6
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
68.3
0.41
0.9
61.7
33.8
Minor 5ss
42.2
-0.9
2.7
50.9
39.6
Minor BPS
55.3
0.14
2
71.68
39.5

Associated Gene:

Gene:
POLR1B
Ensembl Gene ID:
ENSAPLG00000004142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004271
12600271 - 12616845
16575