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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12603607_12603718_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12603607 - 12603718
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCCAC
5'SS Class:
major
3'SS Sequence:
TTCTTCCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
AAATCTCTAACA
Flanking Amino Acid:
YSGYDMEDAMIVNKSSWERG
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
61.1
39.6
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
81.8
0.72
0.7
81.3
23.8
Minor 5ss
32.9
-2
3
38.7
40.9
Minor BPS
61.1
0.34
1.6
68.99
36.6

Associated Gene:

Gene:
POLR1B
Ensembl Gene ID:
ENSAPLG00000004142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004271
12600271 - 12616845
16575