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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12605084_12605678_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12605084 - 12605678
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGATTCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCTTCCTGACCT
Flanking Amino Acid:
RKEWIGTLEQIFMNVATMES
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
75.7
0.58
1
70.4
40.2
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
67.2
0.62
1.8
84.75
41.8

Associated Gene:

Gene:
POLR1B
Ensembl Gene ID:
ENSAPLG00000004142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004271
12600271 - 12616845
16575