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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12605850_12606291_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12605850 - 12606291
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGTCTTG
5'SS Class:
weak_major
3'SS Sequence:
ATTGCACAAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCTAAATT
Flanking Amino Acid:
QLAEALRRFKITQEKRFPAR
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.4
0.18
1.3
54.6
44.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
59.5
0.21
1.1
52.9
40.4
Minor 5ss
42.5
-0.8
3.1
56.3
47.9
Minor BPS
69.8
0.7
1.6
84.43
36.6

Associated Gene:

Gene:
POLR1B
Ensembl Gene ID:
ENSAPLG00000004142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004271
12600271 - 12616845
16575