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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12606426_12607044_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12606426 - 12607044
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTCTTTCTCACA
Flanking Amino Acid:
RDLPPLLCALGVVPIDATPS
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
88.1
28.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
87.6
0.85
0.6
83.5
25
Minor 5ss
45.1
-0.5
3.1
67
44.3
Minor BPS
48.7
-0.1
2
66.77
40.3

Associated Gene:

Gene:
POLR1B
Ensembl Gene ID:
ENSAPLG00000004142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004271
12600271 - 12616845
16575