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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12607327_12608120_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12607327 - 12608120
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TAAATCTCAATT
Flanking Amino Acid:
LATGNLRSKTGLGMLQDSGL
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
71.5
0.48
0.9
63.4
42.3
Minor 5ss
33.5
-1.9
3
41.5
39.2
Minor BPS
57.1
0.3
1.5
71.08
39.6

Associated Gene:

Gene:
POLR1B
Ensembl Gene ID:
ENSAPLG00000004142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004271
12600271 - 12616845
16575