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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12608293_12609063_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12608293 - 12609063
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAACCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCACTTTTAAAC
Flanking Amino Acid:
PGQLYLMFLKERLENWLQSV
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.8
0.45
0.9
63.7
36.8
Minor 5ss
38.3
-1.3
3
48.3
47.4
Minor BPS
56.7
0.19
1.4
61.32
37.8

Associated Gene:

Gene:
POLR1B
Ensembl Gene ID:
ENSAPLG00000004142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004271
12600271 - 12616845
16575