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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12609236_12610625_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12609236 - 12610625
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TCTCTTCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAA
U12 Branch Point Sequence:
ATGGTGTTAGTC
Flanking Amino Acid:
SNEQAADLIFNKCVCIHLTD
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
77.2
37.7
Major BPS
63.3
0.33
1.2
55.1
42.1
Major PPT
85.1
0.79
0.7
77.2
31.5
Minor 5ss
47.1
-0.3
2.5
59.8
38.9
Minor BPS
42.6
-0.5
2.2
51.38
40.7

Associated Gene:

Gene:
POLR1B
Ensembl Gene ID:
ENSAPLG00000004142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004271
12600271 - 12616845
16575