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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12610850_12612780_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12610850 - 12612780
Intron Length:
1931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTTTCTGATGT
Flanking Amino Acid:
FFLPLGFALKALVNFTDYQI
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
49.5
0.04
2
73.14
43.6

Associated Gene:

Gene:
POLR1B
Ensembl Gene ID:
ENSAPLG00000004142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004271
12600271 - 12616845
16575