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Intron Name: Anas_platyrhynchos_platyrhynchos_3_12612918_12613826_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12612918 - 12613826

Intron Length:

909

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCTAA

5'SS Class:

strong_major

3'SS Sequence:

ATAATTTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

CTTGTGATAATT

Flanking Amino Acid:

KNRGPGFTEYGVVMHCVKEE

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

72.9

34.4

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

79.6

0.67

0.9

73.7

40.8

Minor 5ss

43.3

-0.7

2.9

52.2

Minor BPS

45.3

-0.2

2.3

67.5

44.1

Associated Gene:

Gene:

POLR1B

Ensembl Gene ID:

ENSAPLG00000004142

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004271

12600271 - 12616845

16575