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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12615030_12616428_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12615030 - 12616428
Intron Length:
1399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGTTC
5'SS Class:
major
3'SS Sequence:
TGTATCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATCAT
U12 Branch Point Sequence:
TGTTGTATCATT
Flanking Amino Acid:
LRSTYRGKITVDISWSVNGV
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
70.3
36.6
Major BPS
70.5
0.51
1.3
74
41.2
Major PPT
74.3
0.55
0.9
71.3
39.4
Minor 5ss
36.3
-1.5
3.4
50.6
46.1
Minor BPS
44.6
-0.3
2.3
68.98
42.6

Associated Gene:

Gene:
POLR1B
Ensembl Gene ID:
ENSAPLG00000004142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004271
12600271 - 12616845
16575