Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12616597_12616686_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12616597 - 12616686

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCTGGGGG

5'SS Class:

major

3'SS Sequence:

TCTTTCCCCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGCTGAG

U12 Branch Point Sequence:

TCCCGCTGAGGC

Flanking Amino Acid:

ISEGVYQALQDIAPLEFALR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.33

1.3

51.3

45.5

Major BPS

-0.2

1.6

40.4

42.3

Major PPT

82.3

0.73

0.7

77.4

24.5

Minor 5ss

30.1

-2.3

3.3

38.2

46.8

Minor BPS

38.1

-0.9

2.1

44.11

43.8

Associated Gene:

Gene:

POLR1B

Ensembl Gene ID:

ENSAPLG00000004142

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004271

12600271 - 12616845

16575