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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12625172_12625267_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12625172 - 12625267
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTTT
5'SS Class:
weak_major
3'SS Sequence:
CTTCCCCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAACTGAGACT
Flanking Amino Acid:
LEPGHRKFDIRSWVLVDHQY
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
78.8
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.7
0.47
0.7
62.5
28.6
Minor 5ss
68.6
0.63
2.3
82.3
37.5
Minor BPS
42.7
-0.4
2.2
60.98
43

Associated Gene:

Gene:
TTL
Ensembl Gene ID:
ENSAPLG00000004001
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004099
12622112 - 12632845
10734