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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12628297_12629331_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12628297 - 12629331
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TATCTCTTCACC
Flanking Amino Acid:
DKLCRKASLVKLIKTSPELS
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
81.5
32
Major BPS
77.5
0.68
1
79.6
33
Major PPT
76.5
0.6
0.8
69.5
35.8
Minor 5ss
35.6
-1.6
3.3
48.9
41.5
Minor BPS
62
0.36
1.7
72.71
38

Associated Gene:

Gene:
TTL
Ensembl Gene ID:
ENSAPLG00000004001
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004099
12622112 - 12632845
10734