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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12634810_12636724_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12634810 - 12636724
Intron Length:
1915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
ACGTCTTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
ATATCCCTAAGC
Flanking Amino Acid:
PEGIEDVEKTQLPGMVTPPP
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1
59
41.7
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
67.4
0.39
1.1
67.6
37.4
Minor 5ss
30.3
-2.3
2.9
37.8
40.8
Minor BPS
57.6
0.22
2
70.73
40.1

Associated Gene:

Gene:
SLC22A7
Ensembl Gene ID:
ENSAPLG00000003838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022311
12634755 - 12652915
18161