About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12636932_12637581_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12636932 - 12637581
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
GTCTCCACCACC
Flanking Amino Acid:
YTSELYPTVLRQNGMGYTSF
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
81.1
0.7
0.7
72.2
32.4
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
45.8
-0.3
2.2
60.45
44.3

Associated Gene:

Gene:
SLC22A7
Ensembl Gene ID:
ENSAPLG00000003838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041660
12633427 - 12652915
19489
ENSAPLT00000022311
12634755 - 12652915
18161
ENSAPLT00000018271
12636601 - 12652915
16315
ENSAPLT00000003931
12636721 - 12652915
16195
ENSAPLT00000043203
12632952 - 12652915
19964