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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1263711_1269207_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1263711 - 1269207
Intron Length:
5497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTACA
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TCTTCCATAGCT
Flanking Amino Acid:
SSEEEEEQQQGDDVDHEMED
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
71.8
39.9
Major BPS
65
0.37
1.3
76.1
38
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
40.5
-1.1
2.8
52.7
43.9
Minor BPS
65
0.55
1.9
85.1
41.2

Associated Gene:

Gene:
ESF1
Ensembl Gene ID:
ENSAPLG00000012113
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012639
1244241 - 1277071
32831