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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12637691_12637924_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12637691 - 12637924
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTGGGACC
5'SS Class:
weak_major
3'SS Sequence:
TCTTTCCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGTCATAAAT
Flanking Amino Acid:
SVLQTMSNGKSFTSLRSVVA
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.1
0.14
1.3
57.2
38.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
84.5
0.78
0.7
77
31.7
Minor 5ss
30.9
-2.2
3.2
41
38.2
Minor BPS
59.5
0.38
1.8
81.82
39.4

Associated Gene:

Gene:
SLC22A7
Ensembl Gene ID:
ENSAPLG00000003838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003931
12636721 - 12652915
16195