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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12637691_12638199_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12637691 - 12638199
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGATGC
5'SS Class:
major
3'SS Sequence:
TCTTTCCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGTCATAAAT
Flanking Amino Acid:
CIGANIIIPEPFTSLRSVVA
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.3
62.9
38.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
84.5
0.78
0.7
77
31.7
Minor 5ss
34.2
-1.8
3.1
41
38.9
Minor BPS
59.5
0.38
1.8
81.82
39.4

Associated Gene:

Gene:
SLC22A7
Ensembl Gene ID:
ENSAPLG00000003838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018271
12636601 - 12652915
16315
ENSAPLT00000043203
12632952 - 12652915
19964
ENSAPLT00000022311
12634755 - 12652915
18161