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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12637691_12638229_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12637691 - 12638229
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAT|GCATAGGAG
5'SS Class:
weak_major
3'SS Sequence:
TCTTTCCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGTCATAAAT
Flanking Amino Acid:
QAWSLILTGLSFTSLRSVVA
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.2
0.17
1.4
51
43.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
84.5
0.78
0.7
77
31.7
Minor 5ss
26.1
-2.7
4.4
40.2
46.6
Minor BPS
59.5
0.38
1.8
81.82
39.4

Associated Gene:

Gene:
SLC22A7
Ensembl Gene ID:
ENSAPLG00000003838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041660
12633427 - 12652915
19489