About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12637958_12638229_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12637958 - 12638229
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAT|GCATAGGAG
5'SS Class:
weak_major
3'SS Sequence:
TGACAAGGTTAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
CCAGTTATGACA
Flanking Amino Acid:
QAWSLILTGLLSVLQTMSNG
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.2
0.17
1.4
51
43.2
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
47.9
-0.1
1.2
45.7
44.8
Minor 5ss
26.1
-2.7
4.4
40.2
46.6
Minor BPS
43.7
-0.5
1.6
46.33
37.7

Associated Gene:

Gene:
SLC22A7
Ensembl Gene ID:
ENSAPLG00000003838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003931
12636721 - 12652915
16195