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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12638415_12638501_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12638415 - 12638501
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
ACACTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTCTCCCTAATT
Flanking Amino Acid:
RKISLCSGAVWFGVAFSYYG
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.8
42.2
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
73.3
0.52
0.9
66
34.9
Minor 5ss
38.2
-1.3
3.4
52.7
46.4
Minor BPS
73.4
0.81
1.6
88.6
36.6

Associated Gene:

Gene:
SLC22A7
Ensembl Gene ID:
ENSAPLG00000003838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041660
12633427 - 12652915
19489
ENSAPLT00000022311
12634755 - 12652915
18161
ENSAPLT00000018271
12636601 - 12652915
16315
ENSAPLT00000003931
12636721 - 12652915
16195
ENSAPLT00000043203
12632952 - 12652915
19964