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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12638612_12641381_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12638612 - 12641381
Intron Length:
2770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
AGCATCTGAACT
Flanking Amino Acid:
GMKDFALSPEALRTITTDKK
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
73.6
0.53
0.8
65
36.3
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
56.5
0.28
1.5
68.71
41.7

Associated Gene:

Gene:
SLC22A7
Ensembl Gene ID:
ENSAPLG00000003838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041660
12633427 - 12652915
19489
ENSAPLT00000022311
12634755 - 12652915
18161
ENSAPLT00000003931
12636721 - 12652915
16195