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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12640510_12641381_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12640510 - 12641381
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCATTCATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
ACCTCATTCATT
Flanking Amino Acid:
GMKDFALSPELWLMTVFQRE
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
75.9
0.58
0.9
73.4
36
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
49.2
0.02
2
66.91
44.3

Associated Gene:

Gene:
SLC22A7
Ensembl Gene ID:
ENSAPLG00000003838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043203
12632952 - 12652915
19964