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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12645001_12652537_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12645001 - 12652537
Intron Length:
7537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCCT
5'SS Class:
major
3'SS Sequence:
TGACCTCCTCGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTGACC
Flanking Amino Acid:
SQFTSTISTQSLISPFQTLL
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
66.3
45.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
50.2
0.01
1.7
54.8
41.1
Minor 5ss
46.1
-0.4
2.9
66.6
44.3
Minor BPS
61.5
0.34
2
80.41
33.9

Associated Gene:

Gene:
SLC22A7
Ensembl Gene ID:
ENSAPLG00000003838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041660
12633427 - 12652915
19489