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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12664004_12664434_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12664004 - 12664434
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCCTCTTCATC
Flanking Amino Acid:
SSPQDAAVAHRLQAQRPAGN
Intron Amino Acid Position:
1207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
55.6
0.16
1.7
66.76
39.6

Associated Gene:

Gene:
TTBK1
Ensembl Gene ID:
ENSAPLG00000003737
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036179
12663577 - 12760216
96640
ENSAPLT00000003830
12663577 - 12749391
85815