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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1269347_1270328_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1269347 - 1270328
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTTA
5'SS Class:
weak_major
3'SS Sequence:
TCTTATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GCTTTCTTATTT
Flanking Amino Acid:
FTSAAMGTSKVDVTWDETDH
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
76.7
34.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.5
0.64
1
82.8
32.2
Minor 5ss
68.9
0.64
1.8
75.8
40.1
Minor BPS
63.6
0.51
1.6
75.8
41.6

Associated Gene:

Gene:
ESF1
Ensembl Gene ID:
ENSAPLG00000012113
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012639
1244241 - 1277071
32831