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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12695351_12699011_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12695351 - 12699011
Intron Length:
3661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAGAAC
5'SS Class:
major
3'SS Sequence:
TTACCCCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TTGTGTTTACCC
Flanking Amino Acid:
RNKLRISISKTQCMVEEEQR
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
69.2
35.4
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
76.8
0.6
0.8
69.7
30.9
Minor 5ss
33.6
-1.9
3.3
42.6
38.9
Minor BPS
54.2
0.11
2
69.38
42.8

Associated Gene:

Gene:
TTBK1
Ensembl Gene ID:
ENSAPLG00000003737
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036179
12663577 - 12760216
96640
ENSAPLT00000025372
12682168 - 12750611
68444
ENSAPLT00000003830
12663577 - 12749391
85815
ENSAPLT00000047078
12683100 - 12750207
67108