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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12699232_12700165_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12699232 - 12700165
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CTGATGTTATTT
Flanking Amino Acid:
QNTRQTAAMFGVVNVTPVPG
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
86.9
30.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
76.7
0.6
0.8
72.4
32.4
Minor 5ss
35.8
-1.6
2.9
43.1
43.9
Minor BPS
43.4
-0.4
2.2
59.23
44.9

Associated Gene:

Gene:
TTBK1
Ensembl Gene ID:
ENSAPLG00000003737
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036179
12663577 - 12760216
96640
ENSAPLT00000025372
12682168 - 12750611
68444
ENSAPLT00000003830
12663577 - 12749391
85815
ENSAPLT00000047078
12683100 - 12750207
67108