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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12700321_12704833_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12700321 - 12704833
Intron Length:
4513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
AAATTTATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTTGCAAATT
Flanking Amino Acid:
LDYFTKPDYQLIMSVFENSM
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
73.2
0.52
1
63.6
46
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
45.9
-0.2
2.5
75.59
41.9

Associated Gene:

Gene:
TTBK1
Ensembl Gene ID:
ENSAPLG00000003737
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047078
12683100 - 12750207
67108
ENSAPLT00000036179
12663577 - 12760216
96640
ENSAPLT00000025372
12682168 - 12750611
68444
ENSAPLT00000003830
12663577 - 12749391
85815