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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1270444_1271908_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1270444 - 1271908
Intron Length:
1465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTCA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGCCTGTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TATATTTGAATA
Flanking Amino Acid:
FESSCSFIDLRFIPDDVTFD
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.1
28.4
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
56.7
0.15
1.2
60.8
40
Minor 5ss
39.8
-1.1
2.8
50.7
45.7
Minor BPS
56.7
0.21
1.4
65.67
34.5

Associated Gene:

Gene:
ESF1
Ensembl Gene ID:
ENSAPLG00000012113
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012639
1244241 - 1277071
32831