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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12704960_12705689_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12704960 - 12705689
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAA
U12 Branch Point Sequence:
AGATTCTTGACT
Flanking Amino Acid:
QLPWRKIKDKEQVGMIKEKY
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
75.1
35.1
Major BPS
56.5
0.16
0.9
63.3
29.1
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
32.4
-2
3.2
42.3
44.8
Minor BPS
71.3
0.75
1.2
78.67
37

Associated Gene:

Gene:
TTBK1
Ensembl Gene ID:
ENSAPLG00000003737
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003830
12663577 - 12749391
85815
ENSAPLT00000047078
12683100 - 12750207
67108
ENSAPLT00000036179
12663577 - 12760216
96640
ENSAPLT00000025372
12682168 - 12750611
68444