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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12724209_12727596_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12724209 - 12727596
Intron Length:
3388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGATTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTATATTGATT
Flanking Amino Acid:
KFNYVVMQLQGRNLADLRRS
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79.6
0.67
1
77
41.9
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
55.5
0.25
1.6
74.73
35.7

Associated Gene:

Gene:
TTBK1
Ensembl Gene ID:
ENSAPLG00000003737
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003830
12663577 - 12749391
85815
ENSAPLT00000047078
12683100 - 12750207
67108
ENSAPLT00000036179
12663577 - 12760216
96640
ENSAPLT00000025372
12682168 - 12750611
68444