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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12737884_12744843_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12737884 - 12744843
Intron Length:
6960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCAAA
U12 Branch Point Sequence:
TGTACCAAACCT
Flanking Amino Acid:
NYVVKDRWKVLKKIGGGGFG
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
54.9
0.12
1.2
63
32
Major PPT
81.6
0.71
0.8
74
36.7
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
46.1
-0.2
2.2
70.56
45.7

Associated Gene:

Gene:
TTBK1
Ensembl Gene ID:
ENSAPLG00000003737
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036179
12663577 - 12760216
96640
ENSAPLT00000025372
12682168 - 12750611
68444
ENSAPLT00000003830
12663577 - 12749391
85815
ENSAPLT00000047078
12683100 - 12750207
67108