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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12745003_12750168_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12745003 - 12750168
Intron Length:
5166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
ATTCTGTCATTC
Flanking Amino Acid:
FRLLFQVQQEINGSFKLGAT
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.4
29.5
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
82.1
0.72
0.7
74.2
30.9
Minor 5ss
45.7
-0.5
2.9
64.3
47.2
Minor BPS
40.9
-0.7
2.2
53.84
38.3

Associated Gene:

Gene:
TTBK1
Ensembl Gene ID:
ENSAPLG00000003737
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047078
12683100 - 12750207
67108