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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12745003_12759924_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12745003 - 12759924
Intron Length:
14922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
ATTCTGTCATTC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
82.1
0.72
0.7
74.2
30.9
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
40.9
-0.7
2.2
53.84
38.3

Associated Gene:

Gene:
TTBK1
Ensembl Gene ID:
ENSAPLG00000003737
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036179
12663577 - 12760216
96640