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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1274545_1275367_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1274545 - 1275367
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTTTCTCCCATT
Flanking Amino Acid:
LDKDAPRGEEITSRLAVCNM
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
80.1
0.68
0.8
78
29.7
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
47.6
-0.1
2.2
76.58
40.6

Associated Gene:

Gene:
ESF1
Ensembl Gene ID:
ENSAPLG00000012113
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012639
1244241 - 1277071
32831