About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12786766_12787885_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12786766 - 12787885
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTATCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTACATTTATCT
Flanking Amino Acid:
YLLYSALTHKYVFDYQEGDV
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.1
68.8
43.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
85.9
0.81
0.8
80.5
31.3
Minor 5ss
39.1
-1.2
2.9
49.5
46.7
Minor BPS
55
0.24
1.8
75.49
40.8

Associated Gene:

Gene:
ACSS1
Ensembl Gene ID:
ENSAPLG00000003258
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003357
12765621 - 12799803
34183