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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12788034_12788320_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12788034 - 12788320
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATGACCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTTATGACCT
Flanking Amino Acid:
FESTPVYPDPGRYWEVVQRL
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
79.3
31.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74.5
0.55
0.9
66.6
40
Minor 5ss
28.2
-2.5
2.8
32.2
42.5
Minor BPS
49.4
0.03
2
74.64
41.7

Associated Gene:

Gene:
ACSS1
Ensembl Gene ID:
ENSAPLG00000003258
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003357
12765621 - 12799803
34183