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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12788459_12789059_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12788459 - 12789059
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGGC
5'SS Class:
major
3'SS Sequence:
ATTTTGGATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
DRSSLKTLGSVGEPINNEAW
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
67.5
37.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.6
0.4
1
59.4
45.8
Minor 5ss
28.2
-2.5
3.7
40.6
46
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
ACSS1
Ensembl Gene ID:
ENSAPLG00000003258
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003357
12765621 - 12799803
34183