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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12789153_12793201_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12789153 - 12793201
Intron Length:
4049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
ATTATTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCATTATT
Flanking Amino Acid:
CTLVDTWWQTETGGICIAPR
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.8
0.78
0.8
81.9
35.1
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
66.5
0.6
1.9
89.31
34.9

Associated Gene:

Gene:
ACSS1
Ensembl Gene ID:
ENSAPLG00000003258
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003357
12765621 - 12799803
34183