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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12796834_12797430_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12796834 - 12797430
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTGCTCATTT
Flanking Amino Acid:
IGYPHEIKGEGAFAFIVLRD
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.3
0.79
0.7
78.4
35.6
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
52.3
0.15
2.2
79.99
42.5

Associated Gene:

Gene:
ACSS1
Ensembl Gene ID:
ENSAPLG00000003258
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003357
12765621 - 12799803
34183