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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1280013_1280333_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1280013 - 1280333
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGGTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTCTGCAAAT
Flanking Amino Acid:
DTFDLVVSSLSLHWVNDLPK
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.5
0.62
0.9
73.7
40.5
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
48.7
-0
2.2
74.74
41.8

Associated Gene:

Gene:
NDUFAF5
Ensembl Gene ID:
ENSAPLG00000012410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012918
1277414 - 1283942
6529