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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1280374_1281441_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1280374 - 1281441
Intron Length:
1068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
AATAATATAATT
Flanking Amino Acid:
VNDLPKAFREIHQVLKPDGV
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
79
0.72
1
78.4
31.2
Major PPT
81
0.7
0.8
76.7
31.9
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
48.2
-0
1.7
66.6
37.7

Associated Gene:

Gene:
NDUFAF5
Ensembl Gene ID:
ENSAPLG00000012410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012918
1277414 - 1283942
6529