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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12806781_12809778_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12806781 - 12809778
Intron Length:
2998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCAAAG
U12 Branch Point Sequence:
ATTGGTGCAAAG
Flanking Amino Acid:
LDCPIDPQPISLKEPPLLTG
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
45.3
-0.2
1.5
53
41.4
Major PPT
88.6
0.87
0.7
83.9
31
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
35.2
-1.2
2.3
42.55
42.9

Associated Gene:

Gene:
APMAP
Ensembl Gene ID:
ENSAPLG00000003059
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003113
12803754 - 12815802
12049