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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12809895_12810872_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12809895 - 12810872
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
ATCAAGTTAATT
Flanking Amino Acid:
VGPESIVNTGDVLFTGTADG
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
75.7
40.1
Major BPS
73.9
0.59
1
81
30.2
Major PPT
85.8
0.81
0.8
79.9
37.7
Minor 5ss
42.5
-0.8
2.9
60.1
44
Minor BPS
47.8
-0
2.2
67.91
43.1

Associated Gene:

Gene:
APMAP
Ensembl Gene ID:
ENSAPLG00000003059
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003113
12803754 - 12815802
12049