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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12813400_12813875_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12813400 - 12813875
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCG|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTCACA
Flanking Amino Acid:
FLLMEGTDDGRLLEYDTVTK
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.81
1.2
89.2
28.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.8
0.74
0.7
81
31
Minor 5ss
30.5
-2.2
3.9
46.6
41.8
Minor BPS
52.1
0.06
2.3
77.54
38.9

Associated Gene:

Gene:
APMAP
Ensembl Gene ID:
ENSAPLG00000003059
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003113
12803754 - 12815802
12049