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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12814011_12814364_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12814011 - 12814364
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTATACCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GATTCCTTAATC
Flanking Amino Acid:
VQETTMARIRRYYVSGLMKG
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.5
0.71
0.9
78.2
35.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
81.8
0.98
1
80.71
33.4

Associated Gene:

Gene:
APMAP
Ensembl Gene ID:
ENSAPLG00000003059
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003113
12803754 - 12815802
12049