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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12814558_12815592_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12814558 - 12815592
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TTTTCTTTATAG
Flanking Amino Acid:
KPWIKRMIFKLLSQETVTKF
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
88.2
0.86
0.6
84
24.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
64
0.3
1.8
72.46
40.4

Associated Gene:

Gene:
APMAP
Ensembl Gene ID:
ENSAPLG00000003059
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003113
12803754 - 12815802
12049